J5_7OSM_003

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU

Length

37 nucleotides

Bulged bases

7OSM|1|18S|U|694, 7OSM|1|18S|C|696, 7OSM|1|18S|C|697, 7OSM|1|18S|U|813, 7OSM|1|18S|G|815, 7OSM|1|18S|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OSM|1|18S|A|636
7OSM|1|18S|C|637
7OSM|1|18S|U|638
7OSM|1|18S|U|639
7OSM|1|18S|U|640
7OSM|1|18S|G|641
*
7OSM|1|18S|U|693
7OSM|1|18S|U|694
7OSM|1|18S|U|695
7OSM|1|18S|C|696
7OSM|1|18S|C|697
7OSM|1|18S|U|698
7OSM|1|18S|U|699
*
7OSM|1|18S|G|739
7OSM|1|18S|A|740
7OSM|1|18S|C|741
7OSM|1|18S|U|742
7OSM|1|18S|U|743
7OSM|1|18S|U|744
*
7OSM|1|18S|A|807
7OSM|1|18S|U|808
7OSM|1|18S|A|809
7OSM|1|18S|G|810
7OSM|1|18S|A|811
7OSM|1|18S|A|812
7OSM|1|18S|U|813
7OSM|1|18S|A|814
7OSM|1|18S|G|815
7OSM|1|18S|G|816
7OSM|1|18S|A|817
*
7OSM|1|18S|U|854
7OSM|1|18S|A|855
7OSM|1|18S|A|856
7OSM|1|18S|U|857
7OSM|1|18S|G|858
7OSM|1|18S|A|859
7OSM|1|18S|U|860

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eL19

60S ribosomal protein L19-A

Chain eS4

40S ribosomal protein S4

Chain eS7

40S ribosomal protein S7

Chain uS15

40S ribosomal protein S13

Chain uS17

40S ribosomal protein S11-B

Chain uS8

40S ribosomal protein S22-A