J5_7OSM_007
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7OSM|1|25S|G|2116, 7OSM|1|25S|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7OSM_007 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.063
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7OSM|1|25S|G|1906
7OSM|1|25S|C|1907
7OSM|1|25S|A|1908
7OSM|1|25S|A|1909
7OSM|1|25S|A|1910
7OSM|1|25S|A|1911
7OSM|1|25S|U|1912
7OSM|1|25S|A|1913
7OSM|1|25S|G|1914
*
7OSM|1|25S|U|1938
7OSM|1|25S|G|1939
*
7OSM|1|25S|U|2109
7OSM|1|25S|G|2110
*
7OSM|1|25S|C|2114
7OSM|1|25S|G|2115
7OSM|1|25S|G|2116
7OSM|1|25S|A|2117
7OSM|1|25S|C|2118
7OSM|1|25S|A|2119
7OSM|1|25S|A|2120
7OSM|1|25S|G|2121
7OSM|1|25S|G|2122
*
7OSM|1|25S|C|2331
7OSM|1|25S|A|2332
7OSM|1|25S|C|2333
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain 18S
- Small subunit ribosomal RNA; SSU rRNA
- Chain eL19
- 60S ribosomal protein L19-A
- Chain eL24
- 60S ribosomal protein L24-A
- Chain uL14
- 60S ribosomal protein L23-B
- Chain uL3
- 60S ribosomal protein L3
Coloring options: