J5_7OSM_008

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

7OSM|1|25S|A|2404, 7OSM|1|25S|A|2817, 7OSM|1|25S|G|2874, 7OSM|1|25S|U|2875, 7OSM|1|25S|U|2978, 7OSM|1|25S|U|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OSM|1|25S|A|2399
7OSM|1|25S|G|2400
7OSM|1|25S|A|2401
7OSM|1|25S|A|2402
7OSM|1|25S|G|2403
7OSM|1|25S|A|2404
7OSM|1|25S|C|2405
7OSM|1|25S|C|2406
*
7OSM|1|25S|G|2815
7OSM|1|25S|G|2816
7OSM|1|25S|A|2817
7OSM|1|25S|U|2818
7OSM|1|25S|A|2819
7OSM|1|25S|A|2820
7OSM|1|25S|C|2821
7OSM|1|25S|U|2822
7OSM|1|25S|G|2823
*
7OSM|1|25S|C|2867
7OSM|1|25S|U|2868
7OSM|1|25S|U|2869
7OSM|1|25S|C|2870
7OSM|1|25S|G|2871
7OSM|1|25S|A|2872
7OSM|1|25S|U|2873
7OSM|1|25S|G|2874
7OSM|1|25S|U|2875
7OSM|1|25S|C|2876
*
7OSM|1|25S|G|2951
7OSM|1|25S|G|2952
7OSM|1|25S|U|2953
7OSM|1|25S|U|2954
7OSM|1|25S|U|2955
7OSM|1|25S|A|2956
7OSM|1|25S|G|2957
*
7OSM|1|25S|U|2975
7OSM|1|25S|A|2976
7OSM|1|25S|G|2977
7OSM|1|25S|U|2978
7OSM|1|25S|U|2979
7OSM|1|25S|U|2980

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain ASIT

Transfer RNA; tRNA

Chain eL29

60S ribosomal protein L29

Chain uL16

60S ribosomal protein L10

Chain uL2

60S ribosomal protein L2-B

Chain uL3

60S ribosomal protein L3

Chain uL4

BJ4_G0008850.mRNA.1.CDS.1