J5_7OSM_009
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 7OSM|1|25S|G|2418, 7OSM|1|25S|A|2799, 7OSM|1|25S|G|2800, 7OSM|1|25S|A|2801, 7OSM|1|25S|A|2802, 7OSM|1|25S|A|2803
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7OSM_009 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.0714
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08912.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
7OSM|1|25S|U|2416
7OSM|1|25S|U|2417
7OSM|1|25S|G|2418
7OSM|1|25S|A|2419
*
7OSM|1|25S|U|2611
7OSM|1|25S|U|2612
7OSM|1|25S|U|2613
7OSM|1|25S|G|2614
*
7OSM|1|25S|C|2627
7OSM|1|25S|A|2628
*
7OSM|1|25S|U|2650
7OSM|1|25S|G|2651
*
7OSM|1|25S|C|2798
7OSM|1|25S|A|2799
7OSM|1|25S|G|2800
7OSM|1|25S|A|2801
7OSM|1|25S|A|2802
7OSM|1|25S|A|2803
7OSM|1|25S|A|2804
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain PSIT
- Transfer RNA; tRNA
- Chain eL15
- 60S ribosomal protein L15-A
- Chain eL18
- BJ4_G0033900.mRNA.1.CDS.1
- Chain eL21
- BJ4_G0003770.mRNA.1.CDS.1
- Chain eL29
- 60S ribosomal protein L29
- Chain eL42
- BJ4_G0001880.mRNA.1.CDS.1
- Chain uL15
- 60S ribosomal protein L28
- Chain uL2
- 60S ribosomal protein L2-B
Coloring options: