3D structure

PDB id
7OT5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
CspA-70 cotranslational folding intermediate 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
7OT5|1|1|U|1758, 7OT5|1|1|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7OT5_004 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.0595
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

7OT5|1|1|G|1674
7OT5|1|1|C|1675
7OT5|1|1|A|1676
7OT5|1|1|A|1677
7OT5|1|1|A|1678
7OT5|1|1|A|1679
7OT5|1|1|U|1680
7OT5|1|1|G|1681
7OT5|1|1|G|1682
*
7OT5|1|1|C|1706
7OT5|1|1|G|1707
*
7OT5|1|1|U|1751
7OT5|1|1|C|1752
*
7OT5|1|1|G|1756
7OT5|1|1|A|1757
7OT5|1|1|U|1758
7OT5|1|1|A|1759
7OT5|1|1|C|1760
7OT5|1|1|C|1761
7OT5|1|1|A|1762
7OT5|1|1|G|1763
7OT5|1|1|C|1764
*
7OT5|1|1|G|1988
7OT5|1|1|G|1989
7OT5|1|1|C|1990

Current chains

Chain 1
23S rRNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain D
50S ribosomal protein L3
Chain J
50S ribosomal protein L14
Chain O
50S ribosomal protein L19

Coloring options:


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