J5_7OW7_002
3D structure
- PDB id
- 7OW7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EIF6-bound large subunit of the human ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GCC*GCAGAU(OMC)
- Length
- 24 nucleotides
- Bulged bases
- 7OW7|1|A|C|2289, 7OW7|1|A|U|2350
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7OW7_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0606
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7OW7|1|A|G|1335
7OW7|1|A|G|1336
7OW7|1|A|A|1337
7OW7|1|A|G|1338
7OW7|1|A|U|1339
7OW7|1|A|OMC|1340
*
7OW7|1|A|G|1516
7OW7|1|A|G|1517
7OW7|1|A|A|1518
7OW7|1|A|C|1519
*
7OW7|1|A|G|1658
7OW7|1|A|U|1659
7OW7|1|A|U|1660
7OW7|1|A|C|1661
*
7OW7|1|A|G|2288
7OW7|1|A|C|2289
7OW7|1|A|C|2290
*
7OW7|1|A|G|2345
7OW7|1|A|C|2346
7OW7|1|A|A|2347
7OW7|1|A|G|2348
7OW7|1|A|A|2349
7OW7|1|A|U|2350
7OW7|1|A|OMC|2351
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- 60S ribosomal protein L4
- Chain K
- 60S ribosomal protein L18
- Chain U
- 60S ribosomal protein L27a
- Chain Y
- 60S ribosomal protein L32
- Chain k
- 60S ribosomal protein L28
- Chain r
- 60S ribosomal protein L13
- Chain t
- 60S ribosomal protein L15
Coloring options: