Loop J5_7OW7

3D structure

PDB id: 7OW7 (explore in PDB, NAKB, or RNA 3D Hub)
Description: EIF6-bound large subunit of the human ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.2 Å

Loop

Sequence: AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
Length: 40 nucleotides
Bulged bases: 7OW7|1|A|A|3908, 7OW7|1|A|A|4394, 7OW7|1|A|U|4450, 7OW7|1|A|G|4451, 7OW7|1|A|U|4555, 7OW7|1|A|U|4556
QA status: Modified nucleotides: OMG, 5MC, UR3, PSU

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7OW7|1|A|A|3903
7OW7|1|A|G|3904
7OW7|1|A|A|3905
7OW7|1|A|A|3906
7OW7|1|A|G|3907
7OW7|1|A|A|3908
7OW7|1|A|C|3909
7OW7|1|A|C|3910
*
7OW7|1|A|OMG|4392
7OW7|1|A|G|4393
7OW7|1|A|A|4394
7OW7|1|A|U|4395
7OW7|1|A|A|4396
7OW7|1|A|A|4397
7OW7|1|A|C|4398
7OW7|1|A|U|4399||A
7OW7|1|A|G|4400
*
7OW7|1|A|C|4444
7OW7|1|A|U|4445
7OW7|1|A|U|4446
7OW7|1|A|5MC|4447
7OW7|1|A|G|4448
7OW7|1|A|A|4449
7OW7|1|A|U|4450
7OW7|1|A|G|4451
7OW7|1|A|U|4452
7OW7|1|A|C|4453
*
7OW7|1|A|G|4528
7OW7|1|A|G|4529
7OW7|1|A|UR3|4530
7OW7|1|A|U|4531
7OW7|1|A|PSU|4532
7OW7|1|A|A|4533
7OW7|1|A|G|4534
*
7OW7|1|A|PSU|4552
7OW7|1|A|A|4553
7OW7|1|A|G|4554
7OW7|1|A|U|4555
7OW7|1|A|U|4556
7OW7|1|A|U|4557

Current chains

Chain A: 28S rRNA

Nearby chains

Chain D: 60S ribosomal protein L8
Chain E: 60S ribosomal protein L3 isoform a
Chain F: 60S ribosomal protein L4
Chain U: 60S ribosomal protein L27a
Chain V: 60S ribosomal protein L29

J5_7OW7_004