J5_7OYD_003
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7OYD|1|5|G|3624, 7OYD|1|5|G|3629
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7OYD_003 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1003
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OYD|1|5|G|2859
7OYD|1|5|C|2860
7OYD|1|5|A|2861
7OYD|1|5|A|2862
7OYD|1|5|G|2863
7OYD|1|5|C|2864
7OYD|1|5|OMC|2865
7OYD|1|5|G|2866
7OYD|1|5|G|2867
*
7OYD|1|5|U|2891
7OYD|1|5|G|2892
*
7OYD|1|5|U|3617
7OYD|1|5|G|3618
*
7OYD|1|5|C|3622
7OYD|1|5|G|3623
7OYD|1|5|G|3624
7OYD|1|5|A|3625
7OYD|1|5|C|3626
7OYD|1|5|C|3627
7OYD|1|5|A|3628
7OYD|1|5|G|3629
7OYD|1|5|G|3630
*
7OYD|1|5|C|3839
7OYD|1|5|A|3840
7OYD|1|5|C|3841
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- uL3
- Chain R
- 60S ribosomal protein L19
- Chain V
- Ribosomal protein L23
- Chain W
- eL24
Coloring options: