J5_7OYD_004
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AGAAGA(OMC)C*GGAUAACUG*CUU(5MC)GA(PSU)GUC*G(B8W)(UR3)(PSU)UAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 7OYD|1|5|A|4398, 7OYD|1|5|G|4455, 7OYD|1|5|U|4559, 7OYD|1|5|U|4560
- QA status
- Modified nucleotides: OMC, 5MC, PSU, B8W, UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7OYD|1|5|A|3907
7OYD|1|5|G|3908
7OYD|1|5|A|3909
7OYD|1|5|A|3910
7OYD|1|5|G|3911
7OYD|1|5|A|3912
7OYD|1|5|OMC|3913
7OYD|1|5|C|3914
*
7OYD|1|5|G|4396
7OYD|1|5|G|4397
7OYD|1|5|A|4398
7OYD|1|5|U|4399
7OYD|1|5|A|4400
7OYD|1|5|A|4401
7OYD|1|5|C|4402
7OYD|1|5|U|4403
7OYD|1|5|G|4404
*
7OYD|1|5|C|4448
7OYD|1|5|U|4449
7OYD|1|5|U|4450
7OYD|1|5|5MC|4451
7OYD|1|5|G|4452
7OYD|1|5|A|4453
7OYD|1|5|PSU|4454
7OYD|1|5|G|4455
7OYD|1|5|U|4456
7OYD|1|5|C|4457
*
7OYD|1|5|G|4532
7OYD|1|5|B8W|4533
7OYD|1|5|UR3|4534
7OYD|1|5|PSU|4535
7OYD|1|5|U|4536
7OYD|1|5|A|4537
7OYD|1|5|G|4538
*
7OYD|1|5|U|4556
7OYD|1|5|A|4557
7OYD|1|5|G|4558
7OYD|1|5|U|4559
7OYD|1|5|U|4560
7OYD|1|5|U|4561
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain B
- uL3
- Chain C
- 60S ribosomal protein L4
- Chain b
- 60S ribosomal protein L29
- Chain s1
- Dap1b
- Chain t
- Eukaryotic translation initiation factor 5A-1
Coloring options: