J5_7OYD_005
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 7OYD|1|5|G|3926, 7OYD|1|5|A|4380, 7OYD|1|5|G|4381, 7OYD|1|5|A|4382, 7OYD|1|5|A|4383
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7OYD_005 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.2744
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08912.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
7OYD|1|5|U|3924
7OYD|1|5|U|3925
7OYD|1|5|G|3926
7OYD|1|5|A|3927
*
7OYD|1|5|U|4192
7OYD|1|5|U|4193
7OYD|1|5|U|4194
7OYD|1|5|G|4195
*
7OYD|1|5|C|4208
7OYD|1|5|A|4209
*
7OYD|1|5|U|4231
7OYD|1|5|G|4232
*
7OYD|1|5|C|4379
7OYD|1|5|A|4380
7OYD|1|5|G|4381
7OYD|1|5|A|4382
7OYD|1|5|A|4383
7OYD|1|5|A|4384
7OYD|1|5|A|4385
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain N
- Ribosomal protein L15
- Chain Q
- RPL18
- Chain T
- eL21
- Chain a
- uL15
- Chain b
- 60S ribosomal protein L29
- Chain o
- RPL36A
- Chain t
- Eukaryotic translation initiation factor 5A-1
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