J5_7P48_001
3D structure
- PDB id
- 7P48 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus ribosome in complex with Sal(B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAU*AAG
- Length
- 22 nucleotides
- Bulged bases
- 7P48|1|A|U|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7P48_001 not in the Motif Atlas
- Homologous match to J5_4WF9_001
- Geometric discrepancy: 0.092
- The information below is about J5_4WF9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.2
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
7P48|1|A|C|47
7P48|1|A|G|48
7P48|1|A|A|49
7P48|1|A|U|50
7P48|1|A|G|51
7P48|1|A|A|52
7P48|1|A|A|53
7P48|1|A|G|54
*
7P48|1|A|C|115
7P48|1|A|G|116
7P48|1|A|A|117
7P48|1|A|A|118
7P48|1|A|U|119
7P48|1|A|G|120
*
7P48|1|A|C|129
7P48|1|A|A|130
*
7P48|1|A|U|149
7P48|1|A|A|150
7P48|1|A|U|151
*
7P48|1|A|A|178
7P48|1|A|A|179
7P48|1|A|G|180
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain R
- 50S ribosomal protein L23
Coloring options: