J5_7P48_005
3D structure
- PDB id
- 7P48 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus ribosome in complex with Sal(B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 7P48|1|A|U|2103, 7P48|1|A|G|2455, 7P48|1|A|G|2456, 7P48|1|A|A|2457, 7P48|1|A|U|2458
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7P48_005 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.152
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7P48|1|A|U|2101
7P48|1|A|U|2102
7P48|1|A|U|2103
7P48|1|A|A|2104
*
7P48|1|A|U|2270
7P48|1|A|U|2271
7P48|1|A|U|2272
7P48|1|A|G|2273
*
7P48|1|A|C|2285
7P48|1|A|G|2286
*
7P48|1|A|C|2308
7P48|1|A|G|2309
*
7P48|1|A|C|2454
7P48|1|A|G|2455
7P48|1|A|G|2456
7P48|1|A|A|2457
7P48|1|A|U|2458
7P48|1|A|A|2459
7P48|1|A|A|2460
7P48|1|A|A|2461
7P48|1|A|A|2462
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain 6
- ABC-F type ribosomal protection protein
- Chain C
- 50S ribosomal protein L2
- Chain J
- 50S ribosomal protein L15
- Chain U
- LSU ribosomal protein L27P
- Chain V
- 50S ribosomal protein L28
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