J5_7P7U_001

3D structure

PDB id

7P7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome with P-tRNA, state IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAC*GAG

Length

22 nucleotides

Bulged bases

7P7U|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7P7U_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0722

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7P7U|1|A|C|47
7P7U|1|A|G|48
7P7U|1|A|A|49
7P7U|1|A|U|50
7P7U|1|A|G|51
7P7U|1|A|A|52
7P7U|1|A|A|53
7P7U|1|A|G|54
*
7P7U|1|A|C|115
7P7U|1|A|G|116
7P7U|1|A|A|117
7P7U|1|A|A|118
7P7U|1|A|U|119
7P7U|1|A|G|120
*
7P7U|1|A|C|129
7P7U|1|A|A|130
*
7P7U|1|A|U|149
7P7U|1|A|A|150
7P7U|1|A|C|151
*
7P7U|1|A|G|177
7P7U|1|A|A|178
7P7U|1|A|G|179

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34