J5_7P7U_004
3D structure
- PDB id
- 7P7U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. faecalis 70S ribosome with P-tRNA, state IV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAGUU*AGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 7P7U|1|A|U|1291
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7P7U_004 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.0836
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7P7U|1|A|C|620
7P7U|1|A|G|621
7P7U|1|A|A|622
7P7U|1|A|G|623
7P7U|1|A|U|624
7P7U|1|A|U|625
*
7P7U|1|A|A|707
7P7U|1|A|G|708
7P7U|1|A|A|709
7P7U|1|A|C|710
*
7P7U|1|A|G|848
7P7U|1|A|U|849
7P7U|1|A|U|850
7P7U|1|A|C|851
*
7P7U|1|A|G|1232
7P7U|1|A|C|1233
*
7P7U|1|A|G|1286
7P7U|1|A|A|1287
7P7U|1|A|G|1288
7P7U|1|A|A|1289
7P7U|1|A|A|1290
7P7U|1|A|U|1291
7P7U|1|A|G|1292
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 7
- 50S ribosomal protein L35
- Chain I
- 50S ribosomal protein L4
- Chain O
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L21
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