J5_7PIB_004
3D structure
- PDB id
- 7PIB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GAAAGACCCCG*CGGGGAUAACAG*CCUCGAUGUC*GGUUCAA*UGGUCC
- Length
- 46 nucleotides
- Bulged bases
- 7PIB|1|3|A|2069, 7PIB|1|3|A|2456, 7PIB|1|3|U|2457, 7PIB|1|3|G|2513, 7PIB|1|3|U|2593, 7PIB|1|3|C|2618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7PIB|1|3|G|2064
7PIB|1|3|A|2065
7PIB|1|3|A|2066
7PIB|1|3|A|2067
7PIB|1|3|G|2068
7PIB|1|3|A|2069
7PIB|1|3|C|2070
7PIB|1|3|C|2071
7PIB|1|3|C|2072
7PIB|1|3|C|2073
7PIB|1|3|G|2074
*
7PIB|1|3|C|2451
7PIB|1|3|G|2452
7PIB|1|3|G|2453
7PIB|1|3|G|2454
7PIB|1|3|G|2455
7PIB|1|3|A|2456
7PIB|1|3|U|2457
7PIB|1|3|A|2458
7PIB|1|3|A|2459
7PIB|1|3|C|2460
7PIB|1|3|A|2461
7PIB|1|3|G|2462
*
7PIB|1|3|C|2506
7PIB|1|3|C|2507
7PIB|1|3|U|2508
7PIB|1|3|C|2509
7PIB|1|3|G|2510
7PIB|1|3|A|2511
7PIB|1|3|U|2512
7PIB|1|3|G|2513
7PIB|1|3|U|2514
7PIB|1|3|C|2515
*
7PIB|1|3|G|2590
7PIB|1|3|G|2591
7PIB|1|3|U|2592
7PIB|1|3|U|2593
7PIB|1|3|C|2594
7PIB|1|3|A|2595
7PIB|1|3|A|2596
*
7PIB|1|3|U|2614
7PIB|1|3|G|2615
7PIB|1|3|G|2616
7PIB|1|3|U|2617
7PIB|1|3|C|2618
7PIB|1|3|C|2619
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain a
- 50S ribosomal protein L2
- Chain b
- 50S ribosomal protein L3
- Chain c
- 50S ribosomal protein L4
- Chain k
- 50S ribosomal protein L15
- Chain l
- 50S ribosomal protein L16
- Chain y
- 50S ribosomal protein L32
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