J5_7PIR_005
3D structure
- PDB id
- 7PIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- GAAAGACC*GGAUAACAG*CCUCGAUGUC*GGUUCAA*UGGUCC
- Length
- 40 nucleotides
- Bulged bases
- 7PIR|1|3|A|2456, 7PIR|1|3|U|2457
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7PIR|1|3|G|2064
7PIR|1|3|A|2065
7PIR|1|3|A|2066
7PIR|1|3|A|2067
7PIR|1|3|G|2068
7PIR|1|3|A|2069
7PIR|1|3|C|2070
7PIR|1|3|C|2071
*
7PIR|1|3|G|2454
7PIR|1|3|G|2455
7PIR|1|3|A|2456
7PIR|1|3|U|2457
7PIR|1|3|A|2458
7PIR|1|3|A|2459
7PIR|1|3|C|2460
7PIR|1|3|A|2461
7PIR|1|3|G|2462
*
7PIR|1|3|C|2506
7PIR|1|3|C|2507
7PIR|1|3|U|2508
7PIR|1|3|C|2509
7PIR|1|3|G|2510
7PIR|1|3|A|2511
7PIR|1|3|U|2512
7PIR|1|3|G|2513
7PIR|1|3|U|2514
7PIR|1|3|C|2515
*
7PIR|1|3|G|2590
7PIR|1|3|G|2591
7PIR|1|3|U|2592
7PIR|1|3|U|2593
7PIR|1|3|C|2594
7PIR|1|3|A|2595
7PIR|1|3|A|2596
*
7PIR|1|3|U|2614
7PIR|1|3|G|2615
7PIR|1|3|G|2616
7PIR|1|3|U|2617
7PIR|1|3|C|2618
7PIR|1|3|C|2619
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain a
- 50S ribosomal protein L2
- Chain b
- 50S ribosomal protein L3
- Chain c
- 50S ribosomal protein L4
- Chain k
- 50S ribosomal protein L15
- Chain l
- 50S ribosomal protein L16
- Chain u
- 50S ribosomal protein L27
- Chain y
- 50S ribosomal protein L32
Coloring options: