J5_7PJS_004

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

7PJS|1|A|U|1758, 7PJS|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7PJS_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0524

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7PJS|1|A|G|1674
7PJS|1|A|C|1675
7PJS|1|A|A|1676
7PJS|1|A|A|1677
7PJS|1|A|A|1678
7PJS|1|A|A|1679
7PJS|1|A|U|1680
7PJS|1|A|G|1681
7PJS|1|A|G|1682
*
7PJS|1|A|C|1706
7PJS|1|A|G|1707
*
7PJS|1|A|U|1751
7PJS|1|A|C|1752
*
7PJS|1|A|G|1756
7PJS|1|A|A|1757
7PJS|1|A|U|1758
7PJS|1|A|A|1759
7PJS|1|A|C|1760
7PJS|1|A|C|1761
7PJS|1|A|A|1762
7PJS|1|A|G|1763
7PJS|1|A|C|1764
*
7PJS|1|A|G|1988
7PJS|1|A|G|1989
7PJS|1|A|C|1990

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19