J5_7PJY_004

3D structure

PDB id

7PJY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

7PJY|1|A|U|1758, 7PJY|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7PJY_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0747

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7PJY|1|A|G|1674
7PJY|1|A|C|1675
7PJY|1|A|A|1676
7PJY|1|A|A|1677
7PJY|1|A|A|1678
7PJY|1|A|A|1679
7PJY|1|A|U|1680
7PJY|1|A|G|1681
7PJY|1|A|G|1682
*
7PJY|1|A|C|1706
7PJY|1|A|G|1707
*
7PJY|1|A|U|1751
7PJY|1|A|C|1752
*
7PJY|1|A|G|1756
7PJY|1|A|A|1757
7PJY|1|A|U|1758
7PJY|1|A|A|1759
7PJY|1|A|C|1760
7PJY|1|A|C|1761
7PJY|1|A|A|1762
7PJY|1|A|G|1763
7PJY|1|A|C|1764
*
7PJY|1|A|G|1988
7PJY|1|A|G|1989
7PJY|1|A|C|1990

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19

Chain a

Small subunit ribosomal RNA; SSU rRNA