J5_7PWO_005
3D structure
- PDB id
- 7PWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 7PWO|1|1|A|1891, 7PWO|1|1|A|2239, 7PWO|1|1|U|2240, 7PWO|1|1|U|2295, 7PWO|1|1|G|2296, 7PWO|1|1|U|2399, 7PWO|1|1|U|2400
- QA status
- Modified nucleotides: OMG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7PWO|1|1|A|1886
7PWO|1|1|G|1887
7PWO|1|1|A|1888
7PWO|1|1|A|1889
7PWO|1|1|G|1890
7PWO|1|1|A|1891
7PWO|1|1|C|1892
7PWO|1|1|C|1893
*
7PWO|1|1|OMG|2237
7PWO|1|1|G|2238
7PWO|1|1|A|2239
7PWO|1|1|U|2240
7PWO|1|1|A|2241
7PWO|1|1|A|2242
7PWO|1|1|C|2243
7PWO|1|1|U|2244
7PWO|1|1|G|2245
*
7PWO|1|1|C|2289
7PWO|1|1|U|2290
7PWO|1|1|U|2291
7PWO|1|1|5MC|2292
7PWO|1|1|G|2293
7PWO|1|1|A|2294
7PWO|1|1|U|2295
7PWO|1|1|G|2296
7PWO|1|1|U|2297
7PWO|1|1|C|2298
*
7PWO|1|1|G|2372
7PWO|1|1|G|2373
7PWO|1|1|U|2374
7PWO|1|1|U|2375
7PWO|1|1|U|2376
7PWO|1|1|A|2377
7PWO|1|1|G|2378
*
7PWO|1|1|U|2396
7PWO|1|1|A|2397
7PWO|1|1|G|2398
7PWO|1|1|U|2399
7PWO|1|1|U|2400
7PWO|1|1|U|2401
Current chains
- Chain 1
- rRNA 28S
Nearby chains
- Chain A2
- Ribosomal protein L2
- Chain B2
- Ribosomal protein L3
- Chain C2
- Ribosomal protein L4
- Chain E
- P-site tRNA
- Chain b2
- 60S ribosomal protein L29
Coloring options: