3D structure

PDB id
7Q08 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Candida albicans 80S ribosome in complex with cycloheximide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.56 Å

Loop

Sequence
GCAAAAUAG*UG*UG*CGGACAAGG*CAC
Length
25 nucleotides
Bulged bases
7Q08|1|1|G|2094, 7Q08|1|1|G|2099
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7Q08_004 not in the Motif Atlas
Homologous match to J5_8C3A_004
Geometric discrepancy: 0.0657
The information below is about J5_8C3A_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7Q08|1|1|G|1902
7Q08|1|1|C|1903
7Q08|1|1|A|1904
7Q08|1|1|A|1905
7Q08|1|1|A|1906
7Q08|1|1|A|1907
7Q08|1|1|U|1908
7Q08|1|1|A|1909
7Q08|1|1|G|1910
*
7Q08|1|1|U|1934
7Q08|1|1|G|1935
*
7Q08|1|1|U|2087
7Q08|1|1|G|2088
*
7Q08|1|1|C|2092
7Q08|1|1|G|2093
7Q08|1|1|G|2094
7Q08|1|1|A|2095
7Q08|1|1|C|2096
7Q08|1|1|A|2097
7Q08|1|1|A|2098
7Q08|1|1|G|2099
7Q08|1|1|G|2100
*
7Q08|1|1|C|2309
7Q08|1|1|A|2310
7Q08|1|1|C|2311

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 6
Ribosomal 60S subunit protein L23B
Chain 7
Ribosomal 60S subunit protein L24A
Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain k
Ribosomal 60S subunit protein L3
Chain z
Ribosomal protein L19

Coloring options:


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