J5_7Q0F_004
3D structure
- PDB id
- 7Q0F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with phyllanthoside
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7Q0F|1|1|G|2094, 7Q0F|1|1|G|2099
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7Q0F_004 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0665
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
7Q0F|1|1|G|1902
7Q0F|1|1|C|1903
7Q0F|1|1|A|1904
7Q0F|1|1|A|1905
7Q0F|1|1|A|1906
7Q0F|1|1|A|1907
7Q0F|1|1|U|1908
7Q0F|1|1|A|1909
7Q0F|1|1|G|1910
*
7Q0F|1|1|U|1934
7Q0F|1|1|G|1935
*
7Q0F|1|1|U|2087
7Q0F|1|1|G|2088
*
7Q0F|1|1|C|2092
7Q0F|1|1|G|2093
7Q0F|1|1|G|2094
7Q0F|1|1|A|2095
7Q0F|1|1|C|2096
7Q0F|1|1|A|2097
7Q0F|1|1|A|2098
7Q0F|1|1|G|2099
7Q0F|1|1|G|2100
*
7Q0F|1|1|C|2309
7Q0F|1|1|A|2310
7Q0F|1|1|C|2311
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 6
- Ribosomal 60S subunit protein L23B
- Chain 7
- Ribosomal 60S subunit protein L24A
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain k
- Ribosomal 60S subunit protein L3
- Chain z
- Ribosomal protein L19
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