J5_7QCA_001
3D structure
- PDB id
- 7QCA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Spraguea lophii ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- GGAGUG*CGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 7QCA|1|L50|U|1104
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7QCA_001 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.1339
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.2
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7QCA|1|L50|G|476
7QCA|1|L50|G|477
7QCA|1|L50|A|478
7QCA|1|L50|G|479
7QCA|1|L50|U|480
7QCA|1|L50|G|481
*
7QCA|1|L50|C|549
7QCA|1|L50|G|550
7QCA|1|L50|A|551
7QCA|1|L50|C|552
*
7QCA|1|L50|G|692
7QCA|1|L50|U|693
7QCA|1|L50|U|694
7QCA|1|L50|C|695
*
7QCA|1|L50|G|1045
7QCA|1|L50|C|1046
*
7QCA|1|L50|G|1099
7QCA|1|L50|C|1100
7QCA|1|L50|A|1101
7QCA|1|L50|G|1102
7QCA|1|L50|A|1103
7QCA|1|L50|U|1104
7QCA|1|L50|C|1105
Current chains
- Chain L50
- RNA 23S
Nearby chains
- Chain LAA
- uL15 LAA
- Chain LC0
- 60S ribosomal protein L4
- Chain LEE
- 60S ribosomal protein L32
- Chain LL0
- 60S ribosomal protein L13
- Chain LN0
- Ribosomal protein L15
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