J5_7QCA_003
3D structure
- PDB id
- 7QCA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Spraguea lophii ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 7QCA|1|L50|A|1839, 7QCA|1|L50|A|2185, 7QCA|1|L50|U|2186, 7QCA|1|L50|U|2241, 7QCA|1|L50|G|2242, 7QCA|1|L50|U|2346, 7QCA|1|L50|U|2347
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7QCA|1|L50|A|1834
7QCA|1|L50|G|1835
7QCA|1|L50|A|1836
7QCA|1|L50|A|1837
7QCA|1|L50|G|1838
7QCA|1|L50|A|1839
7QCA|1|L50|C|1840
7QCA|1|L50|C|1841
*
7QCA|1|L50|G|2183
7QCA|1|L50|G|2184
7QCA|1|L50|A|2185
7QCA|1|L50|U|2186
7QCA|1|L50|A|2187
7QCA|1|L50|A|2188
7QCA|1|L50|C|2189
7QCA|1|L50|U|2190
7QCA|1|L50|G|2191
*
7QCA|1|L50|C|2235
7QCA|1|L50|U|2236
7QCA|1|L50|U|2237
7QCA|1|L50|C|2238
7QCA|1|L50|G|2239
7QCA|1|L50|A|2240
7QCA|1|L50|U|2241
7QCA|1|L50|G|2242
7QCA|1|L50|U|2243
7QCA|1|L50|C|2244
*
7QCA|1|L50|G|2319
7QCA|1|L50|G|2320
7QCA|1|L50|U|2321
7QCA|1|L50|U|2322
7QCA|1|L50|U|2323
7QCA|1|L50|A|2324
7QCA|1|L50|G|2325
*
7QCA|1|L50|U|2343
7QCA|1|L50|A|2344
7QCA|1|L50|G|2345
7QCA|1|L50|U|2346
7QCA|1|L50|U|2347
7QCA|1|L50|U|2348
Current chains
- Chain L50
- RNA 23S
Nearby chains
- Chain LA0
- 60S ribosomal protein L8
- Chain LAA
- uL15 LAA
- Chain LB0
- 60S ribosomal protein L3
- Chain LC0
- 60S ribosomal protein L4
- Chain LI0
- S60 ribosomal protein L10
- Chain LP0
- 60S ribosomal protein L17
Coloring options: