J5_7QCA_004
3D structure
- PDB id
- 7QCA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Spraguea lophii ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- UUGA*UUUG*CG*CG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 7QCA|1|L50|G|1853, 7QCA|1|L50|A|2167, 7QCA|1|L50|G|2168, 7QCA|1|L50|A|2169, 7QCA|1|L50|A|2170
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7QCA_004 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.3101
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.2
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7QCA|1|L50|U|1851
7QCA|1|L50|U|1852
7QCA|1|L50|G|1853
7QCA|1|L50|A|1854
*
7QCA|1|L50|U|1982
7QCA|1|L50|U|1983
7QCA|1|L50|U|1984
7QCA|1|L50|G|1985
*
7QCA|1|L50|C|1998
7QCA|1|L50|G|1999
*
7QCA|1|L50|C|2021
7QCA|1|L50|G|2022
*
7QCA|1|L50|C|2166
7QCA|1|L50|A|2167
7QCA|1|L50|G|2168
7QCA|1|L50|A|2169
7QCA|1|L50|A|2170
7QCA|1|L50|A|2171
7QCA|1|L50|A|2172
Current chains
- Chain L50
- RNA 23S
Nearby chains
- Chain LA0
- 60S ribosomal protein L8
- Chain LAA
- uL15 LAA
- Chain LN0
- Ribosomal protein L15
- Chain LOO
- 60S ribosomal protein L44
- Chain LT0
- 60s ribosomal protein L21
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