J5_7QCA_005
3D structure
- PDB id
- 7QCA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Spraguea lophii ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- CAUG*CGGAAGGC*GAG*CAGG*CAGCAG
- Length
- 25 nucleotides
- Bulged bases
- 7QCA|1|S60|U|54, 7QCA|1|S60|A|85, 7QCA|1|S60|C|327
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7QCA|1|S60|C|52
7QCA|1|S60|A|53
7QCA|1|S60|U|54
7QCA|1|S60|G|55
*
7QCA|1|S60|C|82
7QCA|1|S60|G|83
7QCA|1|S60|G|84
7QCA|1|S60|A|85
7QCA|1|S60|A|86
7QCA|1|S60|G|87
7QCA|1|S60|G|88
7QCA|1|S60|C|89
*
7QCA|1|S60|G|289
7QCA|1|S60|A|290
7QCA|1|S60|G|291
*
7QCA|1|S60|C|312
7QCA|1|S60|A|313
7QCA|1|S60|G|314
7QCA|1|S60|G|315
*
7QCA|1|S60|C|324
7QCA|1|S60|A|325
7QCA|1|S60|G|326
7QCA|1|S60|C|327
7QCA|1|S60|A|328
7QCA|1|S60|G|329
Current chains
- Chain S60
- RNA SSU
Nearby chains
- Chain LV0
- Ribosomal protein L23
- Chain SE0
- 40S ribosomal protein S4
- Chain SG0
- 40S ribosomal protein S6
- Chain SI0
- 40S ribosomal protein S8
- Chain SY0
- 40s ribosomal protein s24
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