J5_7QG8_001

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7QG8_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.0671

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7QG8|1|0|C|36
7QG8|1|0|U|37
7QG8|1|0|G|38
7QG8|1|0|G|39
*
7QG8|1|0|C|403
7QG8|1|0|G|404
7QG8|1|0|U|405
7QG8|1|0|G|406
*
7QG8|1|0|C|436
7QG8|1|0|U|437
7QG8|1|0|U|438
7QG8|1|0|U|439
7QG8|1|0|C|440
*
7QG8|1|0|G|497
7QG8|1|0|A|498
7QG8|1|0|A|499
7QG8|1|0|G|500
*
7QG8|1|0|C|545
7QG8|1|0|A|546
7QG8|1|0|A|547
7QG8|1|0|G|548

Current chains

Chain 0

16S rRNA

Nearby chains

Chain 3

30S ribosomal protein S4

Chain E

30S ribosomal protein S12