3D structure

PDB id
7QG8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the collided E. coli disome - VemP-stalled 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.97 Å

Loop

Sequence
CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
Length
28 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7QG8_002 not in the Motif Atlas
Homologous match to J5_5J7L_002
Geometric discrepancy: 0.0587
The information below is about J5_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_67416.1
Basepair signature
cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
Number of instances in this motif group
1

Unit IDs

7QG8|1|0|C|36
7QG8|1|0|U|37
7QG8|1|0|G|38
7QG8|1|0|G|39
*
7QG8|1|0|C|403
7QG8|1|0|G|404
7QG8|1|0|U|405
7QG8|1|0|G|406
*
7QG8|1|0|C|436
7QG8|1|0|U|437
7QG8|1|0|U|438
7QG8|1|0|U|439
7QG8|1|0|C|440
7QG8|1|0|A|441
7QG8|1|0|G|442
*
7QG8|1|0|C|492
7QG8|1|0|A|493
7QG8|1|0|G|494
7QG8|1|0|A|495
7QG8|1|0|A|496
7QG8|1|0|G|497
7QG8|1|0|A|498
7QG8|1|0|A|499
7QG8|1|0|G|500
*
7QG8|1|0|C|545
7QG8|1|0|A|546
7QG8|1|0|A|547
7QG8|1|0|G|548

Current chains

Chain 0
16S rRNA

Nearby chains

Chain 3
30S ribosomal protein S4
Chain E
30S ribosomal protein S12

Coloring options:


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