3D structure

PDB id
7QG8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the collided E. coli disome - VemP-stalled 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.97 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
7QG8|1|0|A|109, 7QG8|1|0|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7QG8_003 not in the Motif Atlas
Homologous match to J5_5J7L_003
Geometric discrepancy: 0.078
The information below is about J5_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

7QG8|1|0|C|58
7QG8|1|0|A|59
7QG8|1|0|A|60
7QG8|1|0|G|61
*
7QG8|1|0|C|106
7QG8|1|0|G|107
7QG8|1|0|G|108
7QG8|1|0|A|109
7QG8|1|0|C|110
7QG8|1|0|G|111
7QG8|1|0|G|112
7QG8|1|0|G|113
*
7QG8|1|0|C|314
7QG8|1|0|A|315
7QG8|1|0|C|316
*
7QG8|1|0|G|337
7QG8|1|0|A|338
7QG8|1|0|C|339
*
7QG8|1|0|G|350
7QG8|1|0|G|351
7QG8|1|0|C|352
7QG8|1|0|A|353
7QG8|1|0|G|354

Current chains

Chain 0
16S rRNA

Nearby chains

Chain I
30S ribosomal protein S16
Chain X
50S ribosomal protein L14
Chain u
30S ribosomal protein S20

Coloring options:


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