J5_7QG8_003

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

7QG8|1|0|A|109, 7QG8|1|0|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7QG8_003 not in the Motif Atlas

Homologous match to J5_5J7L_003

Geometric discrepancy: 0.078

The information below is about J5_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7QG8|1|0|C|58
7QG8|1|0|A|59
7QG8|1|0|A|60
7QG8|1|0|G|61
*
7QG8|1|0|C|106
7QG8|1|0|G|107
7QG8|1|0|G|108
7QG8|1|0|A|109
7QG8|1|0|C|110
7QG8|1|0|G|111
7QG8|1|0|G|112
7QG8|1|0|G|113
*
7QG8|1|0|C|314
7QG8|1|0|A|315
7QG8|1|0|C|316
*
7QG8|1|0|G|337
7QG8|1|0|A|338
7QG8|1|0|C|339
*
7QG8|1|0|G|350
7QG8|1|0|G|351
7QG8|1|0|C|352
7QG8|1|0|A|353
7QG8|1|0|G|354

Current chains

Chain 0

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S16

Chain X

50S ribosomal protein L14

Chain u

30S ribosomal protein S20