J5_7QG8_004

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7QG8|1|N|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7QG8_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0491

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7QG8|1|N|C|47
7QG8|1|N|G|48
7QG8|1|N|A|49
7QG8|1|N|U|50
7QG8|1|N|G|51
7QG8|1|N|A|52
7QG8|1|N|A|53
7QG8|1|N|G|54
*
7QG8|1|N|C|116
7QG8|1|N|G|117
7QG8|1|N|A|118
7QG8|1|N|A|119
7QG8|1|N|U|120
7QG8|1|N|G|121
*
7QG8|1|N|C|130
7QG8|1|N|A|131
*
7QG8|1|N|U|148
7QG8|1|N|A|149
7QG8|1|N|U|150
*
7QG8|1|N|A|176
7QG8|1|N|G|177
7QG8|1|N|G|178

Current chains

Chain N

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L34