J5_7QGH_001

3D structure

PDB id

7QGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.48 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7QGH_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.067

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7QGH|1|0|C|36
7QGH|1|0|U|37
7QGH|1|0|G|38
7QGH|1|0|G|39
*
7QGH|1|0|C|403
7QGH|1|0|G|404
7QGH|1|0|U|405
7QGH|1|0|G|406
*
7QGH|1|0|C|436
7QGH|1|0|U|437
7QGH|1|0|U|438
7QGH|1|0|U|439
7QGH|1|0|C|440
*
7QGH|1|0|G|497
7QGH|1|0|A|498
7QGH|1|0|A|499
7QGH|1|0|G|500
*
7QGH|1|0|C|545
7QGH|1|0|A|546
7QGH|1|0|A|547
7QGH|1|0|G|548

Current chains

Chain 0

16S rRNA

Nearby chains

Chain 3

30S ribosomal protein S4

Chain B

30S ribosomal protein S12