3D structure

PDB id
7QGH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the E. coli disome - collided 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
4.48 Å

Loop

Sequence
CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
Length
28 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7QGH_002 not in the Motif Atlas
Homologous match to J5_5J7L_002
Geometric discrepancy: 0.0587
The information below is about J5_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_67416.1
Basepair signature
cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
Number of instances in this motif group
1

Unit IDs

7QGH|1|0|C|36
7QGH|1|0|U|37
7QGH|1|0|G|38
7QGH|1|0|G|39
*
7QGH|1|0|C|403
7QGH|1|0|G|404
7QGH|1|0|U|405
7QGH|1|0|G|406
*
7QGH|1|0|C|436
7QGH|1|0|U|437
7QGH|1|0|U|438
7QGH|1|0|U|439
7QGH|1|0|C|440
7QGH|1|0|A|441
7QGH|1|0|G|442
*
7QGH|1|0|C|492
7QGH|1|0|A|493
7QGH|1|0|G|494
7QGH|1|0|A|495
7QGH|1|0|A|496
7QGH|1|0|G|497
7QGH|1|0|A|498
7QGH|1|0|A|499
7QGH|1|0|G|500
*
7QGH|1|0|C|545
7QGH|1|0|A|546
7QGH|1|0|A|547
7QGH|1|0|G|548

Current chains

Chain 0
16S rRNA

Nearby chains

Chain 3
30S ribosomal protein S4
Chain B
30S ribosomal protein S12

Coloring options:


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