J5_7QGH_004

3D structure

PDB id

7QGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.48 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7QGH|1|N|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7QGH_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0491

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7QGH|1|N|C|47
7QGH|1|N|G|48
7QGH|1|N|A|49
7QGH|1|N|U|50
7QGH|1|N|G|51
7QGH|1|N|A|52
7QGH|1|N|A|53
7QGH|1|N|G|54
*
7QGH|1|N|C|116
7QGH|1|N|G|117
7QGH|1|N|A|118
7QGH|1|N|A|119
7QGH|1|N|U|120
7QGH|1|N|G|121
*
7QGH|1|N|C|130
7QGH|1|N|A|131
*
7QGH|1|N|U|148
7QGH|1|N|A|149
7QGH|1|N|U|150
*
7QGH|1|N|A|176
7QGH|1|N|G|177
7QGH|1|N|G|178

Current chains

Chain N

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L34