J5_7QGR_004

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7QGR|1|N|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7QGR_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0491

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7QGR|1|N|C|47
7QGR|1|N|G|48
7QGR|1|N|A|49
7QGR|1|N|U|50
7QGR|1|N|G|51
7QGR|1|N|A|52
7QGR|1|N|A|53
7QGR|1|N|G|54
*
7QGR|1|N|C|116
7QGR|1|N|G|117
7QGR|1|N|A|118
7QGR|1|N|A|119
7QGR|1|N|U|120
7QGR|1|N|G|121
*
7QGR|1|N|C|130
7QGR|1|N|A|131
*
7QGR|1|N|U|148
7QGR|1|N|A|149
7QGR|1|N|U|150
*
7QGR|1|N|A|176
7QGR|1|N|G|177
7QGR|1|N|G|178

Current chains

Chain N

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L34