Loop J5_7QH7

3D structure

PDB id: 7QH7 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å

Loop

Sequence: UUUA*UUCG*CU*AGG*CGAAGAUCCAAUAACUUGACCAACGGAACAA
Length: 44 nucleotides
Bulged bases: 7QH7|1|A|U|2739, 7QH7|1|A|G|2916, 7QH7|1|A|A|2918, 7QH7|1|A|A|2921
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7QH7|1|A|U|2737
7QH7|1|A|U|2738
7QH7|1|A|U|2739
7QH7|1|A|A|2740
*
7QH7|1|A|U|2807
7QH7|1|A|U|2808
7QH7|1|A|C|2809
7QH7|1|A|G|2810
*
7QH7|1|A|C|2822
7QH7|1|A|U|2823
*
7QH7|1|A|A|2845
7QH7|1|A|G|2846
7QH7|1|A|G|2855
*
7QH7|1|A|C|2877
7QH7|1|A|G|2878
7QH7|1|A|A|2879
7QH7|1|A|A|2880
7QH7|1|A|G|2896
7QH7|1|A|A|2897
7QH7|1|A|U|2898
7QH7|1|A|C|2899
7QH7|1|A|C|2900
7QH7|1|A|A|2901
7QH7|1|A|A|2902
7QH7|1|A|U|2903
7QH7|1|A|A|2904
7QH7|1|A|A|2905
7QH7|1|A|C|2906
7QH7|1|A|U|2907
7QH7|1|A|U|2908
7QH7|1|A|G|2909
7QH7|1|A|A|2910
7QH7|1|A|C|2911
7QH7|1|A|C|2912
7QH7|1|A|A|2913
7QH7|1|A|A|2914
7QH7|1|A|C|2915
7QH7|1|A|G|2916
7QH7|1|A|G|2917
7QH7|1|A|A|2918
7QH7|1|A|A|2919
7QH7|1|A|C|2920
7QH7|1|A|A|2921
7QH7|1|A|A|2922

Current chains

Chain A: 16S ribosomal RNA

Nearby chains

Chain 1: 39S ribosomal protein L33, mitochondrial
Chain 3: 39S ribosomal protein L35, mitochondrial
Chain M: 39S ribosomal protein L15, mitochondrial
Chain X: 39S ribosomal protein L28, mitochondrial
Chain q: Growth arrest and DNA damage-inducible proteins-interacting protein 1

J5_7QH7_005