J5_7QI6_004

3D structure

PDB id

7QI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UUUA*UUCG*CU*AG*CGGAACAA

Length

20 nucleotides

Bulged bases

7QI6|1|A|U|2739, 7QI6|1|A|G|2916, 7QI6|1|A|G|2917, 7QI6|1|A|A|2918

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7QI6_004 not in the Motif Atlas

Homologous match to J5_7A0S_007

Geometric discrepancy: 0.2943

The information below is about J5_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.2

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7QI6|1|A|U|2737
7QI6|1|A|U|2738
7QI6|1|A|U|2739
7QI6|1|A|A|2740
*
7QI6|1|A|U|2807
7QI6|1|A|U|2808
7QI6|1|A|C|2809
7QI6|1|A|G|2810
*
7QI6|1|A|C|2822
7QI6|1|A|U|2823
*
7QI6|1|A|A|2845
7QI6|1|A|G|2846
*
7QI6|1|A|C|2915
7QI6|1|A|G|2916
7QI6|1|A|G|2917
7QI6|1|A|A|2918
7QI6|1|A|A|2919
7QI6|1|A|C|2920
7QI6|1|A|A|2921
7QI6|1|A|A|2922

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 1

39S ribosomal protein L33, mitochondrial

Chain 3

39S ribosomal protein L35, mitochondrial

Chain Ax

Transfer RNA; tRNA

Chain D

39S ribosomal protein L2, mitochondrial

Chain M

39S ribosomal protein L15, mitochondrial

Chain W

39S ribosomal protein L27, mitochondrial

Chain X

39S ribosomal protein L28, mitochondrial