J5_7QIW_005

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU

Length

40 nucleotides

Bulged bases

7QIW|1|2|A|2407, 7QIW|1|2|A|2821, 7QIW|1|2|G|2878, 7QIW|1|2|U|2982, 7QIW|1|2|U|2983

QA status

Modified nucleotides: OMG, 5MC, UR3, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIW|1|2|A|2402
7QIW|1|2|G|2403
7QIW|1|2|A|2404
7QIW|1|2|A|2405
7QIW|1|2|G|2406
7QIW|1|2|A|2407
7QIW|1|2|C|2408
7QIW|1|2|C|2409
*
7QIW|1|2|OMG|2819
7QIW|1|2|G|2820
7QIW|1|2|A|2821
7QIW|1|2|U|2822
7QIW|1|2|A|2823
7QIW|1|2|A|2824
7QIW|1|2|C|2825
7QIW|1|2|U|2826
7QIW|1|2|G|2827
*
7QIW|1|2|C|2871
7QIW|1|2|U|2872
7QIW|1|2|U|2873
7QIW|1|2|5MC|2874
7QIW|1|2|G|2875
7QIW|1|2|A|2876
7QIW|1|2|U|2877
7QIW|1|2|G|2878
7QIW|1|2|U|2879
7QIW|1|2|C|2880
*
7QIW|1|2|G|2955
7QIW|1|2|G|2956
7QIW|1|2|UR3|2957
7QIW|1|2|U|2958
7QIW|1|2|PSU|2959
7QIW|1|2|A|2960
7QIW|1|2|G|2961
*
7QIW|1|2|PSU|2979
7QIW|1|2|A|2980
7QIW|1|2|G|2981
7QIW|1|2|U|2982
7QIW|1|2|U|2983
7QIW|1|2|U|2984

Current chains

Chain 2

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain E

Ribosomal protein L3

Chain F

Ribos_L4_asso_C domain-containing protein