J5_7QIZ_001
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GGG*CGAUGAAG*UGAACG*CG*CAC
- Length
- 22 nucleotides
- Bulged bases
- 7QIZ|1|8|U|43
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7QIZ_001 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.065
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7QIZ|1|2|G|18
7QIZ|1|2|G|19
7QIZ|1|2|G|20
*
7QIZ|1|8|C|40
7QIZ|1|8|G|41
7QIZ|1|8|A|42
7QIZ|1|8|U|43
7QIZ|1|8|G|44
7QIZ|1|8|A|45
7QIZ|1|8|A|46
7QIZ|1|8|G|47
*
7QIZ|1|8|U|107
7QIZ|1|8|G|108
7QIZ|1|8|A|109
7QIZ|1|8|A|110
7QIZ|1|8|C|111
7QIZ|1|8|G|112
*
7QIZ|1|8|C|120
7QIZ|1|8|G|121
*
7QIZ|1|8|C|144
7QIZ|1|8|A|145
7QIZ|1|8|C|146
Current chains
- Chain 2
- 25S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain P
- Ribosomal protein L15
- Chain Z
- Ribosomal_L23eN domain-containing protein
- Chain j
- Similar to 60S ribosomal protein L35
- Chain l
- Ribosomal protein L37
Coloring options: