J5_7QIZ_002
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GC*GCAGAU(OMC)
- Length
- 23 nucleotides
- Bulged bases
- 7QIZ|1|2|U|1447
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7QIZ_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0554
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7QIZ|1|2|G|669
7QIZ|1|2|G|670
7QIZ|1|2|A|671
7QIZ|1|2|G|672
7QIZ|1|2|U|673
7QIZ|1|2|OMC|674
*
7QIZ|1|2|G|809
7QIZ|1|2|G|810
7QIZ|1|2|A|811
7QIZ|1|2|C|812
*
7QIZ|1|2|G|951
7QIZ|1|2|U|952
7QIZ|1|2|U|953
7QIZ|1|2|C|954
*
7QIZ|1|2|G|1387
7QIZ|1|2|C|1388
*
7QIZ|1|2|G|1442
7QIZ|1|2|C|1443
7QIZ|1|2|A|1444
7QIZ|1|2|G|1445
7QIZ|1|2|A|1446
7QIZ|1|2|U|1447
7QIZ|1|2|OMC|1448
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- Ribos_L4_asso_C domain-containing protein
- Chain N
- 60S ribosomal protein L13
- Chain P
- Ribosomal protein L15
- Chain c
- Ribosomal_L18e/L15P domain-containing protein
- Chain g
- 60S ribosomal protein eL32
- Chain r
- Ribosomal_L28e domain-containing protein
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