J5_7QIZ_004
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GCAAAAUGG*UG*UG*CGGACAAG(OMG)*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7QIZ|1|2|G|2120, 7QIZ|1|2|G|2125
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7QIZ_004 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0743
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
7QIZ|1|2|G|1912
7QIZ|1|2|C|1913
7QIZ|1|2|A|1914
7QIZ|1|2|A|1915
7QIZ|1|2|A|1916
7QIZ|1|2|A|1917
7QIZ|1|2|U|1918
7QIZ|1|2|G|1919
7QIZ|1|2|G|1920
*
7QIZ|1|2|U|1944
7QIZ|1|2|G|1945
*
7QIZ|1|2|U|2113
7QIZ|1|2|G|2114
*
7QIZ|1|2|C|2118
7QIZ|1|2|G|2119
7QIZ|1|2|G|2120
7QIZ|1|2|A|2121
7QIZ|1|2|C|2122
7QIZ|1|2|A|2123
7QIZ|1|2|A|2124
7QIZ|1|2|G|2125
7QIZ|1|2|OMG|2126
*
7QIZ|1|2|C|2334
7QIZ|1|2|A|2335
7QIZ|1|2|C|2336
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain E
- Ribosomal protein L3
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain T
- Ribosomal protein L19
- Chain X
- 60S ribosomal protein uL14
- Chain Y
- TRASH domain-containing protein
Coloring options: