Loop J5_7QIZ

3D structure

PDB id: 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Specific features and methylation sites of a plant 80S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.38 Å

Loop

Sequence: AGAAGACCC*G(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
Length: 42 nucleotides
Bulged bases: 7QIZ|1|2|A|2821, 7QIZ|1|2|G|2878, 7QIZ|1|2|U|2982, 7QIZ|1|2|U|2983
QA status: Modified nucleotides: OMG, 5MC, UR3, PSU

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7QIZ|1|2|A|2402
7QIZ|1|2|G|2403
7QIZ|1|2|A|2404
7QIZ|1|2|A|2405
7QIZ|1|2|G|2406
7QIZ|1|2|A|2407
7QIZ|1|2|C|2408
7QIZ|1|2|C|2409
7QIZ|1|2|C|2410
*
7QIZ|1|2|G|2818
7QIZ|1|2|OMG|2819
7QIZ|1|2|G|2820
7QIZ|1|2|A|2821
7QIZ|1|2|U|2822
7QIZ|1|2|A|2823
7QIZ|1|2|A|2824
7QIZ|1|2|C|2825
7QIZ|1|2|U|2826
7QIZ|1|2|G|2827
*
7QIZ|1|2|C|2871
7QIZ|1|2|U|2872
7QIZ|1|2|U|2873
7QIZ|1|2|5MC|2874
7QIZ|1|2|G|2875
7QIZ|1|2|A|2876
7QIZ|1|2|U|2877
7QIZ|1|2|G|2878
7QIZ|1|2|U|2879
7QIZ|1|2|C|2880
*
7QIZ|1|2|G|2955
7QIZ|1|2|G|2956
7QIZ|1|2|UR3|2957
7QIZ|1|2|U|2958
7QIZ|1|2|PSU|2959
7QIZ|1|2|A|2960
7QIZ|1|2|G|2961
*
7QIZ|1|2|PSU|2979
7QIZ|1|2|A|2980
7QIZ|1|2|G|2981
7QIZ|1|2|U|2982
7QIZ|1|2|U|2983
7QIZ|1|2|U|2984

Current chains

Chain 2: 25S rRNA

Nearby chains

Chain D: 60S ribosomal protein L8
Chain E: Ribosomal protein L3
Chain F: Ribos_L4_asso_C domain-containing protein
Chain c: Ribosomal_L18e/L15P domain-containing protein

J5_7QIZ_005