J5_7QIZ_006
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- (PSU)UGA*UU(PSU)G*CA*(OMU)(OMG)*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 7QIZ|1|2|G|2421, 7QIZ|1|2|A|2803, 7QIZ|1|2|G|2804, 7QIZ|1|2|A|2805, 7QIZ|1|2|A|2806
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7QIZ_006 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.3499
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
7QIZ|1|2|PSU|2419
7QIZ|1|2|U|2420
7QIZ|1|2|G|2421
7QIZ|1|2|A|2422
*
7QIZ|1|2|U|2615
7QIZ|1|2|U|2616
7QIZ|1|2|PSU|2617
7QIZ|1|2|G|2618
*
7QIZ|1|2|C|2631
7QIZ|1|2|A|2632
*
7QIZ|1|2|OMU|2654
7QIZ|1|2|OMG|2655
*
7QIZ|1|2|C|2802
7QIZ|1|2|A|2803
7QIZ|1|2|G|2804
7QIZ|1|2|A|2805
7QIZ|1|2|A|2806
7QIZ|1|2|A|2807
7QIZ|1|2|A|2808
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L8
- Chain P
- Ribosomal protein L15
- Chain S
- Ribosomal_L18e/L15P domain-containing protein
- Chain V
- 60S ribosomal protein eL21
- Chain c
- Ribosomal_L18e/L15P domain-containing protein
- Chain d
- 60S ribosomal protein L29
- Chain p
- 60S ribosomal protein eL42
- Chain s
- tRNA
Coloring options: