J5_7QIZ_010

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU

Length

40 nucleotides

Bulged bases

7QIZ|1|2|A|2821, 7QIZ|1|2|G|2878, 7QIZ|1|2|U|2982, 7QIZ|1|2|U|2983

QA status

Modified nucleotides: OMG, 5MC, UR3, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIZ|1|2|A|2402
7QIZ|1|2|G|2403
7QIZ|1|2|A|2404
7QIZ|1|2|A|2405
7QIZ|1|2|G|2406
7QIZ|1|2|A|2407
7QIZ|1|2|C|2408
7QIZ|1|2|C|2409
*
7QIZ|1|2|OMG|2819
7QIZ|1|2|G|2820
7QIZ|1|2|A|2821
7QIZ|1|2|U|2822
7QIZ|1|2|A|2823
7QIZ|1|2|A|2824
7QIZ|1|2|C|2825
7QIZ|1|2|U|2826
7QIZ|1|2|G|2827
*
7QIZ|1|2|C|2871
7QIZ|1|2|U|2872
7QIZ|1|2|U|2873
7QIZ|1|2|5MC|2874
7QIZ|1|2|G|2875
7QIZ|1|2|A|2876
7QIZ|1|2|U|2877
7QIZ|1|2|G|2878
7QIZ|1|2|U|2879
7QIZ|1|2|C|2880
*
7QIZ|1|2|G|2955
7QIZ|1|2|G|2956
7QIZ|1|2|UR3|2957
7QIZ|1|2|U|2958
7QIZ|1|2|PSU|2959
7QIZ|1|2|A|2960
7QIZ|1|2|G|2961
*
7QIZ|1|2|PSU|2979
7QIZ|1|2|A|2980
7QIZ|1|2|G|2981
7QIZ|1|2|U|2982
7QIZ|1|2|U|2983
7QIZ|1|2|U|2984

Current chains

Chain 2

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain E

Ribosomal protein L3

Chain F

Ribos_L4_asso_C domain-containing protein