J5_7QP7_003
3D structure
- PDB id
- 7QP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 48S initiation complex in closed state (h48S AUG closed)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7QP7|1|A|A|92, 7QP7|1|A|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7QP7_003 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0608
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7QP7|1|A|C|53
7QP7|1|A|A|54
7QP7|1|A|U|55
7QP7|1|A|G|56
*
7QP7|1|A|C|89
7QP7|1|A|G|90
7QP7|1|A|A|91
7QP7|1|A|A|92
7QP7|1|A|U|93
7QP7|1|A|G|94
7QP7|1|A|G|95
7QP7|1|A|C|96
*
7QP7|1|A|G|434
7QP7|1|A|A|435
7QP7|1|A|G|436
*
7QP7|1|A|C|457
7QP7|1|A|A|458
7QP7|1|A|C|459
*
7QP7|1|A|G|470
7QP7|1|A|G|471
7QP7|1|A|C|472
7QP7|1|A|A|473
7QP7|1|A|G|474
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain C
- 40S ribosomal protein S4, X isoform
- Chain D
- 40S ribosomal protein S9
- Chain R
- 40S ribosomal protein S8
- Chain S
- 40S ribosomal protein S6
- Chain T
- 40S ribosomal protein S24
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