3D structure

PDB id
7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CAG*CGUAC*GGG*CA*UG
Length
15 nucleotides
Bulged bases
7QQ3|1|I|A|532, 7QQ3|1|I|U|562
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_7QQ3_002 not in the Motif Atlas
Homologous match to J5_5J7L_014
Geometric discrepancy: 0.0646
The information below is about J5_5J7L_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.5
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

7QQ3|1|I|C|531
7QQ3|1|I|A|532
7QQ3|1|I|G|533
*
7QQ3|1|I|C|560
7QQ3|1|I|G|561
7QQ3|1|I|U|562
7QQ3|1|I|A|563
7QQ3|1|I|C|564
*
7QQ3|1|I|G|577
7QQ3|1|I|G|578
7QQ3|1|I|G|579
*
7QQ3|1|I|C|1261
7QQ3|1|I|A|1262
*
7QQ3|1|I|U|2017
7QQ3|1|I|G|2018

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain M
50S ribosomal protein L4
Chain Y
50S ribosomal protein L20
Chain Z
50S ribosomal protein L21
Chain a
50S ribosomal protein L22
Chain i
50S ribosomal protein L32

Coloring options:


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