J5_7QQ3_004

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

7QQ3|1|I|U|1758, 7QQ3|1|I|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7QQ3_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0598

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7QQ3|1|I|G|1674
7QQ3|1|I|C|1675
7QQ3|1|I|A|1676
7QQ3|1|I|A|1677
7QQ3|1|I|A|1678
7QQ3|1|I|A|1679
7QQ3|1|I|U|1680
7QQ3|1|I|G|1681
7QQ3|1|I|G|1682
*
7QQ3|1|I|C|1706
7QQ3|1|I|G|1707
*
7QQ3|1|I|U|1751
7QQ3|1|I|C|1752
*
7QQ3|1|I|G|1756
7QQ3|1|I|A|1757
7QQ3|1|I|U|1758
7QQ3|1|I|A|1759
7QQ3|1|I|C|1760
7QQ3|1|I|C|1761
7QQ3|1|I|A|1762
7QQ3|1|I|G|1763
7QQ3|1|I|C|1764
*
7QQ3|1|I|G|1988
7QQ3|1|I|G|1989
7QQ3|1|I|C|1990

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain S

50S ribosomal protein L14

Chain X

50S ribosomal protein L19