J5_7QVP_001
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAUGAAG*CGAACG*CG*UAC*GUG
- Length
- 22 nucleotides
- Bulged bases
- 7QVP|1|L1|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7QVP|1|L1|C|35
7QVP|1|L1|G|36
7QVP|1|L1|A|37
7QVP|1|L1|U|38
7QVP|1|L1|G|39
7QVP|1|L1|A|40
7QVP|1|L1|A|41
7QVP|1|L1|G|42
*
7QVP|1|L1|C|101
7QVP|1|L1|G|102
7QVP|1|L1|A|103
7QVP|1|L1|A|104
7QVP|1|L1|C|105
7QVP|1|L1|G|106
*
7QVP|1|L1|C|113
7QVP|1|L1|G|114
*
7QVP|1|L1|U|136
7QVP|1|L1|A|137
7QVP|1|L1|C|138
*
7QVP|1|L6|G|19
7QVP|1|L6|U|20
7QVP|1|L6|G|21
Current chains
- Chain L1
- 5.8S ribosomal RNA
- Chain L6
- 28S ribosomal RNA
Nearby chains
- Chain MN
- 60S ribosomal protein L15
- Chain MX
- 60S ribosomal protein L23a
- Chain Mh
- 60S ribosomal protein L35
- Chain Mj
- Ribosomal protein L37
- Chain Ml
- 60S ribosomal protein L39
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