J5_7QVP_005
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 7QVP|1|L5|A|3908, 7QVP|1|L5|A|4394, 7QVP|1|L5|G|4451, 7QVP|1|L5|U|4555, 7QVP|1|L5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7QVP|1|L5|A|3903
7QVP|1|L5|G|3904
7QVP|1|L5|A|3905
7QVP|1|L5|A|3906
7QVP|1|L5|G|3907
7QVP|1|L5|A|3908
7QVP|1|L5|C|3909
7QVP|1|L5|C|3910
*
7QVP|1|L5|G|4392
7QVP|1|L5|G|4393
7QVP|1|L5|A|4394
7QVP|1|L5|U|4395
7QVP|1|L5|A|4396
7QVP|1|L5|A|4397
7QVP|1|L5|C|4398
7QVP|1|L5|U|4399
7QVP|1|L5|G|4400
*
7QVP|1|L5|C|4444
7QVP|1|L5|U|4445
7QVP|1|L5|U|4446
7QVP|1|L5|C|4447
7QVP|1|L5|G|4448
7QVP|1|L5|A|4449
7QVP|1|L5|U|4450
7QVP|1|L5|G|4451
7QVP|1|L5|U|4452
7QVP|1|L5|C|4453
*
7QVP|1|L5|G|4528
7QVP|1|L5|G|4529
7QVP|1|L5|U|4530
7QVP|1|L5|U|4531
7QVP|1|L5|U|4532
7QVP|1|L5|A|4533
7QVP|1|L5|G|4534
*
7QVP|1|L5|U|4552
7QVP|1|L5|A|4553
7QVP|1|L5|G|4554
7QVP|1|L5|U|4555
7QVP|1|L5|U|4556
7QVP|1|L5|U|4557
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain B4
- Transfer RNA; tRNA
- Chain LA
- 60S ribosomal protein L8
- Chain LB
- 60S ribosomal protein L3
- Chain LC
- 60S ribosomal protein L4
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- 60S ribosomal protein L29
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