J5_7QVP_016

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCGCUC*GGG*UGCAUU*ACCUCGGGCCG*CGACC

Length

32 nucleotides

Bulged bases

7QVP|1|S3|G|126, 7QVP|1|S3|C|127, 7QVP|1|S3|U|305, 7QVP|1|S3|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QVP|1|S3|G|123
7QVP|1|S3|U|124
7QVP|1|S3|C|125
7QVP|1|S3|G|126
7QVP|1|S3|C|127
7QVP|1|S3|U|128
7QVP|1|S3|C|129
*
7QVP|1|S3|G|183
7QVP|1|S3|G|184
7QVP|1|S3|G|185
*
7QVP|1|S3|U|214
7QVP|1|S3|G|215
7QVP|1|S3|C|216
7QVP|1|S3|A|217
7QVP|1|S3|U|218
7QVP|1|S3|U|219
*
7QVP|1|S3|A|302
7QVP|1|S3|C|303
7QVP|1|S3|C|304
7QVP|1|S3|U|305
7QVP|1|S3|C|306
7QVP|1|S3|G|307
7QVP|1|S3|G|308
7QVP|1|S3|G|309
7QVP|1|S3|C|310
7QVP|1|S3|C|311
7QVP|1|S3|G|312
*
7QVP|1|S3|C|337
7QVP|1|S3|G|338
7QVP|1|S3|A|339
7QVP|1|S3|C|340
7QVP|1|S3|C|341

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RE

40S ribosomal protein S4, X isoform

Chain RG

40S ribosomal protein S6

Chain RI

40S ribosomal protein S8