J5_7R4X_003
3D structure
- PDB id
- 7R4X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- CAUG*CGAA(PSU)GGC*GA(OMG)*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 7R4X|1|2|A|92, 7R4X|1|2|C|472
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7R4X_003 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1085
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7R4X|1|2|C|53
7R4X|1|2|A|54
7R4X|1|2|U|55
7R4X|1|2|G|56
*
7R4X|1|2|C|89
7R4X|1|2|G|90
7R4X|1|2|A|91
7R4X|1|2|A|92
7R4X|1|2|PSU|93
7R4X|1|2|G|94
7R4X|1|2|G|95
7R4X|1|2|C|96
*
7R4X|1|2|G|434
7R4X|1|2|A|435
7R4X|1|2|OMG|436
*
7R4X|1|2|C|457
7R4X|1|2|A|458
7R4X|1|2|C|459
*
7R4X|1|2|G|470
7R4X|1|2|G|471
7R4X|1|2|C|472
7R4X|1|2|A|473
7R4X|1|2|G|474
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4, X isoform
- Chain G
- 40S ribosomal protein S6
- Chain I
- 40S ribosomal protein S8
- Chain J
- 40S ribosomal protein S9
- Chain Y
- 40S ribosomal protein S24
Coloring options: