J5_7RQ9_001

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

7RQ9|1|1A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7RQ9_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.058

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7RQ9|1|1A|C|47
7RQ9|1|1A|G|48
7RQ9|1|1A|A|49
7RQ9|1|1A|U|50
7RQ9|1|1A|G|51
7RQ9|1|1A|A|52
7RQ9|1|1A|A|53
7RQ9|1|1A|G|54
*
7RQ9|1|1A|C|116
7RQ9|1|1A|G|117
7RQ9|1|1A|A|118
7RQ9|1|1A|A|119
7RQ9|1|1A|U|120
7RQ9|1|1A|G|121
*
7RQ9|1|1A|C|130
7RQ9|1|1A|G|131
*
7RQ9|1|1A|C|148
7RQ9|1|1A|A|149
7RQ9|1|1A|C|150
*
7RQ9|1|1A|G|176
7RQ9|1|1A|G|177
7RQ9|1|1A|G|178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23